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Shutting down a pitcher at an arbitrary inning limit without considering the condition of his arm makes no sense at all. Obviously you monitor the situation every time he pitches, but your job as a franchise is to WIN CHAMPIONSHIPS. If babying your stud pitcher when there is nothing wrong with himis more important than winning, then you should go find a different profession outside of competitive sports.
Also, pitchers pitch year round. Apparently that needs to be cleared up. They pitch at 100% even during the offseason to keep their arms in shape and to continue to improve. Shutting him down isn't like he suddenly stops pitching.
And making him a reliever is not a realistic option because that takes a completely different mindset, warmups, and arm condition. I'd almost argue that that would be worse for his arm because he's not used to that.
I think the staff is plenty good enough to take them all the way. And yes they never announced the inning limit so it makes me believe they've been monitoring him pretty closely all year. I would hope if they shut him down that the the team would still keep him on the roster through the playoffs though since it wouldn't be fair if they won the World Series and he didn't get a ring. Its wasting a spot on the roster but he earned it.
You don't have to be on the active roster to win a ring. Bengie Molina actually got a ring when the Giants won in 2010, even though he was on the losing Rangers. Nomar has a ring from 2004.